presim

Machine-specific architectures supported
Temporal Integration Methods from Vm
Time-stepping Methods
Membrane Models
Domains
Control and Post-processing
Output of Time-space Information

presim

SYNOPSIS

Assemble header file for FORTRAN-77 solver program

SYNTAX

    presim    -commands

DESCRIPTION

This program is used to assemble two include files (simsize.h, dart.h) that are used in the assembly of different versions of the dart solver programs. The include files are used to dimension parameters for different arrays in the model, and to define the cpp flags for inclusion of different modules within the assembled code.

FLAGS

ipts nnn REQUIRED. The number of tissue nodes in the input mesh. The upper bounds on the allowed size will depend on the achine architecture and the specific implementation. For example, the DiFrancesco-Noble membrane model will require space for approximately idf nnn REQUIRED. The connectivity dimensions. For regular/structured grids, set idf to 1 for a 1-D cable with 2 connections per internal node, 2 for a 2-D sheet with 4 connections per internal node and 3 for a 3-D parallelepiped with 6 connections per internal node. For higher order finite difference schemes, idf should be set to (Max number of connections at a single node)/2 idir HOME/include REQUIRED. The directory where the include file simsize.h will be placed. icoars nnn Used only in mesh adaption simulations to specify the size of the initial coarse grid.: REQUIRED. The number of tissue nodes in the input mesh. The upper bounds on the allowed size will depend on the achine architecture and the specific implementation. For example, the DiFrancesco-Noble membrane model will require space for approximately
idf nnn REQUIRED. The connectivity dimensions. For regular/structured grids, set idf to 1 for a 1-D cable with 2 connections per internal node, 2 for a 2-D sheet with 4 connections per internal node and 3 for a 3-D parallelepiped with 6 connections per internal node. For higher order finite difference schemes, idf should be set to (Max number of connections at a single node)/2 idir HOME/include REQUIRED. The directory where the include file simsize.h will be placed. icoars nnn Used only in mesh adaption simulations to specify the size of the initial coarse grid.: REQUIRED. The connectivity dimensions. For regular/structured grids, set idf to 1 for a 1-D cable with 2 connections per internal node, 2 for a 2-D sheet with 4 connections per internal node and 3 for a 3-D parallelepiped with 6 connections per internal node. For higher order finite difference schemes, idf should be set to (Max number of connections at a single node)/2
idir HOME/include REQUIRED. The directory where the include file simsize.h will be placed. icoars nnn Used only in mesh adaption simulations to specify the size of the initial coarse grid.: REQUIRED. The directory where the include file simsize.h will be placed.
icoars nnn Used only in mesh adaption simulations to specify the size of the initial coarse grid.: Used only in mesh adaption simulations to specify the size of the initial coarse grid.

Machine-specific routines

cray Use Cray Research, Inc. scilib routines written into the code.: Use Cray Research, Inc. scilib routines written into the code.
dxml Use Digital Equipment Corporation dxml routines written into the code.: Use Digital Equipment Corporation dxml routines written into the code.
pcg DEFAULT. Portable preconditioned conjugate gradient solver: DEFAULT. Portable preconditioned conjugate gradient solver

Temporal integration methods for Vm

eul DEFAULT. Use the forward difference on the capacitive term to integrate via Euler's method. dtar Primes dart to dynamically track the active region resulting in much faster runs, but loss of repolarization information. Only works with explicit integration simp Use a semi-implicit scheme for the integration of Vm. For the 1-D case, the semi-implicit finite difference stencil leads to a tridiagonal solve or standard Crank-Nicholson. Specify the -cray option in conjuction with -simp for a Cray-specific tridiagonal solver. Additionally specify pcg in conjunction with hyb and imaxnz for the 2-D case and higher when running on a machine other than the cray. Additionally specify cray in conjunction with hyb and imaxnz for the 2-D case and higher when running on the cray. Additionally specify nspcg in conjunction with -nx, -ny, and -nz options for structured grids and use of the NSPCG solver package. In order to use this package, you must be able to link to the NPSCG library on the target machine. maxnz NOTE: for either a bido or a bath simulation, the maximum number of non-zero entries must be specified at the presim step. Although code compilation will complete, the executable should warn if the bmaxnz value specified does not EXACTLY match the bmaxnz value needed. mworki Integer work space size for simp and a preconditioned conjugate gradient solver. The executable will return the required value for this parameter in the event the specified value is too small. mworkr Real work space size for simp and a preconditioned conjugate gradient solver. The executable will return the required value for this parameter in the event the specified value is too small.: DEFAULT. Use the forward difference on the capacitive term to integrate via Euler's method.
dtar Primes dart to dynamically track the active region resulting in much faster runs, but loss of repolarization information. Only works with explicit integration simp Use a semi-implicit scheme for the integration of Vm. For the 1-D case, the semi-implicit finite difference stencil leads to a tridiagonal solve or standard Crank-Nicholson. Specify the -cray option in conjuction with -simp for a Cray-specific tridiagonal solver. Additionally specify pcg in conjunction with hyb and imaxnz for the 2-D case and higher when running on a machine other than the cray. Additionally specify cray in conjunction with hyb and imaxnz for the 2-D case and higher when running on the cray. Additionally specify nspcg in conjunction with -nx, -ny, and -nz options for structured grids and use of the NSPCG solver package. In order to use this package, you must be able to link to the NPSCG library on the target machine. maxnz NOTE: for either a bido or a bath simulation, the maximum number of non-zero entries must be specified at the presim step. Although code compilation will complete, the executable should warn if the bmaxnz value specified does not EXACTLY match the bmaxnz value needed. mworki Integer work space size for simp and a preconditioned conjugate gradient solver. The executable will return the required value for this parameter in the event the specified value is too small. mworkr Real work space size for simp and a preconditioned conjugate gradient solver. The executable will return the required value for this parameter in the event the specified value is too small.: Primes dart to dynamically track the active region resulting in much faster runs, but loss of repolarization information. Only works with explicit integration
simp Use a semi-implicit scheme for the integration of Vm. For the 1-D case, the semi-implicit finite difference stencil leads to a tridiagonal solve or standard Crank-Nicholson. Specify the -cray option in conjuction with -simp for a Cray-specific tridiagonal solver. Additionally specify pcg in conjunction with hyb and imaxnz for the 2-D case and higher when running on a machine other than the cray. Additionally specify cray in conjunction with hyb and imaxnz for the 2-D case and higher when running on the cray. Additionally specify nspcg in conjunction with -nx, -ny, and -nz options for structured grids and use of the NSPCG solver package. In order to use this package, you must be able to link to the NPSCG library on the target machine. maxnz NOTE: for either a bido or a bath simulation, the maximum number of non-zero entries must be specified at the presim step. Although code compilation will complete, the executable should warn if the bmaxnz value specified does not EXACTLY match the bmaxnz value needed. mworki Integer work space size for simp and a preconditioned conjugate gradient solver. The executable will return the required value for this parameter in the event the specified value is too small. mworkr Real work space size for simp and a preconditioned conjugate gradient solver. The executable will return the required value for this parameter in the event the specified value is too small.: Use a semi-implicit scheme for the integration of Vm.

For the 1-D case, the semi-implicit finite difference stencil leads to a tridiagonal solve or standard Crank-Nicholson. Specify the -cray option in conjuction with -simp for a Cray-specific tridiagonal solver.
Additionally specify pcg in conjunction with hyb and imaxnz for the 2-D case and higher when running on a machine other than the cray.
Additionally specify cray in conjunction with hyb and imaxnz for the 2-D case and higher when running on the cray.
Additionally specify nspcg in conjunction with -nx, -ny, and -nz options for structured grids and use of the NSPCG solver package. In order to use this package, you must be able to link to the NPSCG library on the target machine.
maxnz NOTE: for either a bido or a bath simulation, the maximum number of non-zero entries must be specified at the presim step. Although code compilation will complete, the executable should warn if the bmaxnz value specified does not EXACTLY match the bmaxnz value needed. mworki Integer work space size for simp and a preconditioned conjugate gradient solver. The executable will return the required value for this parameter in the event the specified value is too small. mworkr Real work space size for simp and a preconditioned conjugate gradient solver. The executable will return the required value for this parameter in the event the specified value is too small.: NOTE: for either a bido or a bath simulation, the maximum number of non-zero entries must be specified at the presim step. Although code compilation will complete, the executable should warn if the bmaxnz value specified does not EXACTLY match the bmaxnz value needed.
mworki Integer work space size for simp and a preconditioned conjugate gradient solver. The executable will return the required value for this parameter in the event the specified value is too small. mworkr Real work space size for simp and a preconditioned conjugate gradient solver. The executable will return the required value for this parameter in the event the specified value is too small.: Integer work space size for simp and a preconditioned conjugate gradient solver. The executable will return the required value for this parameter in the event the specified value is too small.
mworkr Real work space size for simp and a preconditioned conjugate gradient solver. The executable will return the required value for this parameter in the event the specified value is too small.: Real work space size for simp and a preconditioned conjugate gradient solver. The executable will return the required value for this parameter in the event the specified value is too small.

Time-stepping methods

DEFAULT No time step adjustments are performed. trl Time step is adjusted based on the maximum magnitude of dV/dt at any point in the mesh. Doubling or halving of dt only.: No time step adjustments are performed.
trl Time step is adjusted based on the maximum magnitude of dV/dt at any point in the mesh. Doubling or halving of dt only.: Time step is adjusted based on the maximum magnitude of dV/dt at any point in the mesh. Doubling or halving of dt only.

Membrane models

ej DEFAULT. Ebihara-Johnson sodium current combined with Spach-Kootsey leakage current. fhn FitzHugh-Nagumo model. br Beeler-Reuter model. brej Beeler-Reuter model with Ebihara-Johnson sodium current. dn DiFrancesco-Noble model. lr Luo-Rudy Phase 1 model. lr2 Luo-Rudy Phase 2 Model ipore DeBruin-Krassowska electroporation current dnl2 DiFrancesco-Noble model mixed with the Luo-Rudy Phase 2 model. Must be used in conjunction with -sp flag. sp nnn For models that include a ventricular component (lr) and a Purkinje component (dn), sp is the highest node number for a Purkinje node. At sp+1, the muscle portion of the model starts.: DEFAULT. Ebihara-Johnson sodium current combined with Spach-Kootsey leakage current.
fhn FitzHugh-Nagumo model. br Beeler-Reuter model. brej Beeler-Reuter model with Ebihara-Johnson sodium current. dn DiFrancesco-Noble model. lr Luo-Rudy Phase 1 model. lr2 Luo-Rudy Phase 2 Model ipore DeBruin-Krassowska electroporation current dnl2 DiFrancesco-Noble model mixed with the Luo-Rudy Phase 2 model. Must be used in conjunction with -sp flag. sp nnn For models that include a ventricular component (lr) and a Purkinje component (dn), sp is the highest node number for a Purkinje node. At sp+1, the muscle portion of the model starts.: FitzHugh-Nagumo model.
br Beeler-Reuter model. brej Beeler-Reuter model with Ebihara-Johnson sodium current. dn DiFrancesco-Noble model. lr Luo-Rudy Phase 1 model. lr2 Luo-Rudy Phase 2 Model ipore DeBruin-Krassowska electroporation current dnl2 DiFrancesco-Noble model mixed with the Luo-Rudy Phase 2 model. Must be used in conjunction with -sp flag. sp nnn For models that include a ventricular component (lr) and a Purkinje component (dn), sp is the highest node number for a Purkinje node. At sp+1, the muscle portion of the model starts.: Beeler-Reuter model.
brej Beeler-Reuter model with Ebihara-Johnson sodium current. dn DiFrancesco-Noble model. lr Luo-Rudy Phase 1 model. lr2 Luo-Rudy Phase 2 Model ipore DeBruin-Krassowska electroporation current dnl2 DiFrancesco-Noble model mixed with the Luo-Rudy Phase 2 model. Must be used in conjunction with -sp flag. sp nnn For models that include a ventricular component (lr) and a Purkinje component (dn), sp is the highest node number for a Purkinje node. At sp+1, the muscle portion of the model starts.: Beeler-Reuter model with Ebihara-Johnson sodium current.
dn DiFrancesco-Noble model. lr Luo-Rudy Phase 1 model. lr2 Luo-Rudy Phase 2 Model ipore DeBruin-Krassowska electroporation current dnl2 DiFrancesco-Noble model mixed with the Luo-Rudy Phase 2 model. Must be used in conjunction with -sp flag. sp nnn For models that include a ventricular component (lr) and a Purkinje component (dn), sp is the highest node number for a Purkinje node. At sp+1, the muscle portion of the model starts.: DiFrancesco-Noble model.
lr Luo-Rudy Phase 1 model. lr2 Luo-Rudy Phase 2 Model ipore DeBruin-Krassowska electroporation current dnl2 DiFrancesco-Noble model mixed with the Luo-Rudy Phase 2 model. Must be used in conjunction with -sp flag. sp nnn For models that include a ventricular component (lr) and a Purkinje component (dn), sp is the highest node number for a Purkinje node. At sp+1, the muscle portion of the model starts.: Luo-Rudy Phase 1 model.
lr2 Luo-Rudy Phase 2 Model ipore DeBruin-Krassowska electroporation current dnl2 DiFrancesco-Noble model mixed with the Luo-Rudy Phase 2 model. Must be used in conjunction with -sp flag. sp nnn For models that include a ventricular component (lr) and a Purkinje component (dn), sp is the highest node number for a Purkinje node. At sp+1, the muscle portion of the model starts.: Luo-Rudy Phase 2 Model
ipore DeBruin-Krassowska electroporation current dnl2 DiFrancesco-Noble model mixed with the Luo-Rudy Phase 2 model. Must be used in conjunction with -sp flag. sp nnn For models that include a ventricular component (lr) and a Purkinje component (dn), sp is the highest node number for a Purkinje node. At sp+1, the muscle portion of the model starts.: DeBruin-Krassowska electroporation current
dnl2 DiFrancesco-Noble model mixed with the Luo-Rudy Phase 2 model. Must be used in conjunction with -sp flag. sp nnn For models that include a ventricular component (lr) and a Purkinje component (dn), sp is the highest node number for a Purkinje node. At sp+1, the muscle portion of the model starts.: DiFrancesco-Noble model mixed with the Luo-Rudy Phase 2 model. Must be used in conjunction with -sp flag.
sp nnn For models that include a ventricular component (lr) and a Purkinje component (dn), sp is the highest node number for a Purkinje node. At sp+1, the muscle portion of the model starts.: For models that include a ventricular component (lr) and a Purkinje component (dn), sp is the highest node number for a Purkinje node. At sp+1, the muscle portion of the model starts.

Domains

DEFAULT Monodomain simulation which is analogous to the case of equal anisotropy and an insulated extracellular bounding surface to the interstitial space. Tissue and no bath. bido Bidomain simulation which is analogous to the case of unequal anisotropy and an insulated extracellular bounding surface to the interstitial space. Tissue and no bath. By default, if you run a bidomain simulation dart attempts to write values for both Vm and phio to fan-processed files vm.lst and phio.lst. nx nnn,-ny nnn,-nz nnn The number of nodes in x,y and z. These parameters are required if -bido is specified. bath Bidomain simulation which is analogous to the case of unequal anisotropy and an extracellular bounding conductor connected to the interstitial space. ibath nnn The number of bath nodes in the mesh. This parameter is required if -bath is specified. bmaxnz NOTE: for either a bido or a bath simulation, the maximum number of non-zero entries must be specified at the presim step. Although code compilation will complete, the executable should warn if the bmaxnz value specified does not EXACTLY match the bmaxnz value needed. bworki Integer work space size for a bido or bath run and a preconditioned conjugate gradient solver. The executable will return the required value for this parameter in the event the specified value is too small. bworkr Real work space size for a bido or bath run and a preconditioned conjugate gradient solver. The executable will return the required value for this parameter in the event the specified value is too small. ref specify the node number to be used as the unipolar reference for the PHIO data. edgestim specify field stimulation with current sources on opposite edges of a 2-D grid.: Monodomain simulation which is analogous to the case of equal anisotropy and an insulated extracellular bounding surface to the interstitial space. Tissue and no bath.
bido Bidomain simulation which is analogous to the case of unequal anisotropy and an insulated extracellular bounding surface to the interstitial space. Tissue and no bath. By default, if you run a bidomain simulation dart attempts to write values for both Vm and phio to fan-processed files vm.lst and phio.lst. nx nnn,-ny nnn,-nz nnn The number of nodes in x,y and z. These parameters are required if -bido is specified. bath Bidomain simulation which is analogous to the case of unequal anisotropy and an extracellular bounding conductor connected to the interstitial space. ibath nnn The number of bath nodes in the mesh. This parameter is required if -bath is specified. bmaxnz NOTE: for either a bido or a bath simulation, the maximum number of non-zero entries must be specified at the presim step. Although code compilation will complete, the executable should warn if the bmaxnz value specified does not EXACTLY match the bmaxnz value needed. bworki Integer work space size for a bido or bath run and a preconditioned conjugate gradient solver. The executable will return the required value for this parameter in the event the specified value is too small. bworkr Real work space size for a bido or bath run and a preconditioned conjugate gradient solver. The executable will return the required value for this parameter in the event the specified value is too small. ref specify the node number to be used as the unipolar reference for the PHIO data. edgestim specify field stimulation with current sources on opposite edges of a 2-D grid.: Bidomain simulation which is analogous to the case of unequal anisotropy and an insulated extracellular bounding surface to the interstitial space. Tissue and no bath. By default, if you run a bidomain simulation dart attempts to write values for both Vm and phio to fan-processed files vm.lst and phio.lst.
nx nnn,-ny nnn,-nz nnn The number of nodes in x,y and z. These parameters are required if -bido is specified. bath Bidomain simulation which is analogous to the case of unequal anisotropy and an extracellular bounding conductor connected to the interstitial space. ibath nnn The number of bath nodes in the mesh. This parameter is required if -bath is specified. bmaxnz NOTE: for either a bido or a bath simulation, the maximum number of non-zero entries must be specified at the presim step. Although code compilation will complete, the executable should warn if the bmaxnz value specified does not EXACTLY match the bmaxnz value needed. bworki Integer work space size for a bido or bath run and a preconditioned conjugate gradient solver. The executable will return the required value for this parameter in the event the specified value is too small. bworkr Real work space size for a bido or bath run and a preconditioned conjugate gradient solver. The executable will return the required value for this parameter in the event the specified value is too small. ref specify the node number to be used as the unipolar reference for the PHIO data. edgestim specify field stimulation with current sources on opposite edges of a 2-D grid.: The number of nodes in x,y and z. These parameters are required if -bido is specified.
bath Bidomain simulation which is analogous to the case of unequal anisotropy and an extracellular bounding conductor connected to the interstitial space. ibath nnn The number of bath nodes in the mesh. This parameter is required if -bath is specified. bmaxnz NOTE: for either a bido or a bath simulation, the maximum number of non-zero entries must be specified at the presim step. Although code compilation will complete, the executable should warn if the bmaxnz value specified does not EXACTLY match the bmaxnz value needed. bworki Integer work space size for a bido or bath run and a preconditioned conjugate gradient solver. The executable will return the required value for this parameter in the event the specified value is too small. bworkr Real work space size for a bido or bath run and a preconditioned conjugate gradient solver. The executable will return the required value for this parameter in the event the specified value is too small. ref specify the node number to be used as the unipolar reference for the PHIO data. edgestim specify field stimulation with current sources on opposite edges of a 2-D grid.: Bidomain simulation which is analogous to the case of unequal anisotropy and an extracellular bounding conductor connected to the interstitial space.
ibath nnn The number of bath nodes in the mesh. This parameter is required if -bath is specified. bmaxnz NOTE: for either a bido or a bath simulation, the maximum number of non-zero entries must be specified at the presim step. Although code compilation will complete, the executable should warn if the bmaxnz value specified does not EXACTLY match the bmaxnz value needed. bworki Integer work space size for a bido or bath run and a preconditioned conjugate gradient solver. The executable will return the required value for this parameter in the event the specified value is too small. bworkr Real work space size for a bido or bath run and a preconditioned conjugate gradient solver. The executable will return the required value for this parameter in the event the specified value is too small. ref specify the node number to be used as the unipolar reference for the PHIO data. edgestim specify field stimulation with current sources on opposite edges of a 2-D grid.: The number of bath nodes in the mesh. This parameter is required if -bath is specified.
bmaxnz NOTE: for either a bido or a bath simulation, the maximum number of non-zero entries must be specified at the presim step. Although code compilation will complete, the executable should warn if the bmaxnz value specified does not EXACTLY match the bmaxnz value needed. bworki Integer work space size for a bido or bath run and a preconditioned conjugate gradient solver. The executable will return the required value for this parameter in the event the specified value is too small. bworkr Real work space size for a bido or bath run and a preconditioned conjugate gradient solver. The executable will return the required value for this parameter in the event the specified value is too small. ref specify the node number to be used as the unipolar reference for the PHIO data. edgestim specify field stimulation with current sources on opposite edges of a 2-D grid.: NOTE: for either a bido or a bath simulation, the maximum number of non-zero entries must be specified at the presim step. Although code compilation will complete, the executable should warn if the bmaxnz value specified does not EXACTLY match the bmaxnz value needed.
bworki Integer work space size for a bido or bath run and a preconditioned conjugate gradient solver. The executable will return the required value for this parameter in the event the specified value is too small. bworkr Real work space size for a bido or bath run and a preconditioned conjugate gradient solver. The executable will return the required value for this parameter in the event the specified value is too small. ref specify the node number to be used as the unipolar reference for the PHIO data. edgestim specify field stimulation with current sources on opposite edges of a 2-D grid.: Integer work space size for a bido or bath run and a preconditioned conjugate gradient solver. The executable will return the required value for this parameter in the event the specified value is too small.
bworkr Real work space size for a bido or bath run and a preconditioned conjugate gradient solver. The executable will return the required value for this parameter in the event the specified value is too small. ref specify the node number to be used as the unipolar reference for the PHIO data. edgestim specify field stimulation with current sources on opposite edges of a 2-D grid.: Real work space size for a bido or bath run and a preconditioned conjugate gradient solver. The executable will return the required value for this parameter in the event the specified value is too small.
ref specify the node number to be used as the unipolar reference for the PHIO data. edgestim specify field stimulation with current sources on opposite edges of a 2-D grid.: specify the node number to be used as the unipolar reference for the PHIO data.
edgestim specify field stimulation with current sources on opposite edges of a 2-D grid.: specify field stimulation with current sources on opposite edges of a 2-D grid.

Control and post-processing

peak Store the values for peak at each node in the file vmpeak.out. apa Store the values for the action potential area at each node in the file apa.out. ugle This option MUST be specified for ugle output. The default is no ugle. nostat No statistics report. dbg Yields the node report. timing Explicitly times portions of the code. nocntu By default, the executable will look for *.inp files to set initial values for all integrated variables. If these are no found, the executable will use internal values. At the end of the run, the executable will write a set of *.out files to describe state variables at the last time step. This flag prevents continuation.: Store the values for peak at each node in the file vmpeak.out.

Output of time-space information

nolst No fan processing => no vm.lst file. ifnpts nnn to specify the number of nodes in a reduced key list to be used for fan output. For example, if you are only interested in the waveforms from every 10th node of a 100 node cable, you would load the file fanintra.inp with: 10 20 . . 100 and the fan processing would only take place at nodes on the list. It's possible to set up a separate list for the interstitial/extracellular grid in the file faninter.inp. Here, nnn specifies the number of points in these files. fbgate Write the B gate (LR2) to bgate.lst file. fdgate Write the D gate (DN,LR2) to dgate.lst file. ffgate Write the F gate (LR2) to fgate.lst file. ff1gate Write the F1 gate (DN) to f1gate.lst file. ff2gate Write the F2 gate (DN) to f2gate.lst file. ffcagate Write the FCA gate (LR2) to fcagte.lst file. fggate Write the G gate (LR2) to ggate.lst file. fhgate Write the H gate (DN,LR2) to hgate.lst file. fjgate Write the J gate (LR2) to jgate.lst file. fmgate Write the M gate (DN,LR2) to mgate.lst file. frggate Write the RG gate (DN) to rggate.lst file. fxgate Write the X gate (DN) to xgate.lst file. fygate Write the Y gate (DN) to ygate.lst file. fiion Write the total ionic current to the file iion.lst file. fim Write the total membrane current to the file im.lst file. fcaidn,fcailr Write intracelullar calcium concentration (DN,LR2) fcajsr Write JSR calcium concentration (LR2) fcansr Write NSR calcium concentration (LR2) ficatch Write T-channel calcium current (LR2) ficadn,ficalr Write total calcium current (DN,LR2) fif Write hyperpolarizing or funny current fikdn,fiklr Write total IK (DN,LR2) fik1dn,fik1lr Write IK1 (DN,LR2) finadn,finalr Write fast sodium current (DN,LR2) finacad,finacal Write sodium-calcium exchange current (DN,LR2) finaklr Write sodium-potassium pump current (LR2) fipore Write electroporation current (LR2) fito Write transient outward current (DN): No fan processing => no vm.lst file.
ifnpts nnn to specify the number of nodes in a reduced key list to be used for fan output. For example, if you are only interested in the waveforms from every 10th node of a 100 node cable, you would load the file fanintra.inp with: 10 20 . . 100 and the fan processing would only take place at nodes on the list. It's possible to set up a separate list for the interstitial/extracellular grid in the file faninter.inp. Here, nnn specifies the number of points in these files. fbgate Write the B gate (LR2) to bgate.lst file. fdgate Write the D gate (DN,LR2) to dgate.lst file. ffgate Write the F gate (LR2) to fgate.lst file. ff1gate Write the F1 gate (DN) to f1gate.lst file. ff2gate Write the F2 gate (DN) to f2gate.lst file. ffcagate Write the FCA gate (LR2) to fcagte.lst file. fggate Write the G gate (LR2) to ggate.lst file. fhgate Write the H gate (DN,LR2) to hgate.lst file. fjgate Write the J gate (LR2) to jgate.lst file. fmgate Write the M gate (DN,LR2) to mgate.lst file. frggate Write the RG gate (DN) to rggate.lst file. fxgate Write the X gate (DN) to xgate.lst file. fygate Write the Y gate (DN) to ygate.lst file. fiion Write the total ionic current to the file iion.lst file. fim Write the total membrane current to the file im.lst file. fcaidn,fcailr Write intracelullar calcium concentration (DN,LR2) fcajsr Write JSR calcium concentration (LR2) fcansr Write NSR calcium concentration (LR2) ficatch Write T-channel calcium current (LR2) ficadn,ficalr Write total calcium current (DN,LR2) fif Write hyperpolarizing or funny current fikdn,fiklr Write total IK (DN,LR2) fik1dn,fik1lr Write IK1 (DN,LR2) finadn,finalr Write fast sodium current (DN,LR2) finacad,finacal Write sodium-calcium exchange current (DN,LR2) finaklr Write sodium-potassium pump current (LR2) fipore Write electroporation current (LR2) fito Write transient outward current (DN): to specify the number of nodes in a reduced key list to be used for fan output. For example, if you are only interested in the waveforms from every 10th node of a 100 node cable, you would load the file fanintra.inp with:
10 20 . . 100
and the fan processing would only take place at nodes on the list. It's possible to set up a separate list for the interstitial/extracellular grid in the file faninter.inp. Here, nnn specifies the number of points in these files.
fbgate Write the B gate (LR2) to bgate.lst file. fdgate Write the D gate (DN,LR2) to dgate.lst file. ffgate Write the F gate (LR2) to fgate.lst file. ff1gate Write the F1 gate (DN) to f1gate.lst file. ff2gate Write the F2 gate (DN) to f2gate.lst file. ffcagate Write the FCA gate (LR2) to fcagte.lst file. fggate Write the G gate (LR2) to ggate.lst file. fhgate Write the H gate (DN,LR2) to hgate.lst file. fjgate Write the J gate (LR2) to jgate.lst file. fmgate Write the M gate (DN,LR2) to mgate.lst file. frggate Write the RG gate (DN) to rggate.lst file. fxgate Write the X gate (DN) to xgate.lst file. fygate Write the Y gate (DN) to ygate.lst file. fiion Write the total ionic current to the file iion.lst file. fim Write the total membrane current to the file im.lst file. fcaidn,fcailr Write intracelullar calcium concentration (DN,LR2) fcajsr Write JSR calcium concentration (LR2) fcansr Write NSR calcium concentration (LR2) ficatch Write T-channel calcium current (LR2) ficadn,ficalr Write total calcium current (DN,LR2) fif Write hyperpolarizing or funny current fikdn,fiklr Write total IK (DN,LR2) fik1dn,fik1lr Write IK1 (DN,LR2) finadn,finalr Write fast sodium current (DN,LR2) finacad,finacal Write sodium-calcium exchange current (DN,LR2) finaklr Write sodium-potassium pump current (LR2) fipore Write electroporation current (LR2) fito Write transient outward current (DN): Write the B gate (LR2) to bgate.lst file.
fdgate Write the D gate (DN,LR2) to dgate.lst file. ffgate Write the F gate (LR2) to fgate.lst file. ff1gate Write the F1 gate (DN) to f1gate.lst file. ff2gate Write the F2 gate (DN) to f2gate.lst file. ffcagate Write the FCA gate (LR2) to fcagte.lst file. fggate Write the G gate (LR2) to ggate.lst file. fhgate Write the H gate (DN,LR2) to hgate.lst file. fjgate Write the J gate (LR2) to jgate.lst file. fmgate Write the M gate (DN,LR2) to mgate.lst file. frggate Write the RG gate (DN) to rggate.lst file. fxgate Write the X gate (DN) to xgate.lst file. fygate Write the Y gate (DN) to ygate.lst file. fiion Write the total ionic current to the file iion.lst file. fim Write the total membrane current to the file im.lst file. fcaidn,fcailr Write intracelullar calcium concentration (DN,LR2) fcajsr Write JSR calcium concentration (LR2) fcansr Write NSR calcium concentration (LR2) ficatch Write T-channel calcium current (LR2) ficadn,ficalr Write total calcium current (DN,LR2) fif Write hyperpolarizing or funny current fikdn,fiklr Write total IK (DN,LR2) fik1dn,fik1lr Write IK1 (DN,LR2) finadn,finalr Write fast sodium current (DN,LR2) finacad,finacal Write sodium-calcium exchange current (DN,LR2) finaklr Write sodium-potassium pump current (LR2) fipore Write electroporation current (LR2) fito Write transient outward current (DN): Write the D gate (DN,LR2) to dgate.lst file.
ffgate Write the F gate (LR2) to fgate.lst file. ff1gate Write the F1 gate (DN) to f1gate.lst file. ff2gate Write the F2 gate (DN) to f2gate.lst file. ffcagate Write the FCA gate (LR2) to fcagte.lst file. fggate Write the G gate (LR2) to ggate.lst file. fhgate Write the H gate (DN,LR2) to hgate.lst file. fjgate Write the J gate (LR2) to jgate.lst file. fmgate Write the M gate (DN,LR2) to mgate.lst file. frggate Write the RG gate (DN) to rggate.lst file. fxgate Write the X gate (DN) to xgate.lst file. fygate Write the Y gate (DN) to ygate.lst file. fiion Write the total ionic current to the file iion.lst file. fim Write the total membrane current to the file im.lst file. fcaidn,fcailr Write intracelullar calcium concentration (DN,LR2) fcajsr Write JSR calcium concentration (LR2) fcansr Write NSR calcium concentration (LR2) ficatch Write T-channel calcium current (LR2) ficadn,ficalr Write total calcium current (DN,LR2) fif Write hyperpolarizing or funny current fikdn,fiklr Write total IK (DN,LR2) fik1dn,fik1lr Write IK1 (DN,LR2) finadn,finalr Write fast sodium current (DN,LR2) finacad,finacal Write sodium-calcium exchange current (DN,LR2) finaklr Write sodium-potassium pump current (LR2) fipore Write electroporation current (LR2) fito Write transient outward current (DN): Write the F gate (LR2) to fgate.lst file.
ff1gate Write the F1 gate (DN) to f1gate.lst file. ff2gate Write the F2 gate (DN) to f2gate.lst file. ffcagate Write the FCA gate (LR2) to fcagte.lst file. fggate Write the G gate (LR2) to ggate.lst file. fhgate Write the H gate (DN,LR2) to hgate.lst file. fjgate Write the J gate (LR2) to jgate.lst file. fmgate Write the M gate (DN,LR2) to mgate.lst file. frggate Write the RG gate (DN) to rggate.lst file. fxgate Write the X gate (DN) to xgate.lst file. fygate Write the Y gate (DN) to ygate.lst file. fiion Write the total ionic current to the file iion.lst file. fim Write the total membrane current to the file im.lst file. fcaidn,fcailr Write intracelullar calcium concentration (DN,LR2) fcajsr Write JSR calcium concentration (LR2) fcansr Write NSR calcium concentration (LR2) ficatch Write T-channel calcium current (LR2) ficadn,ficalr Write total calcium current (DN,LR2) fif Write hyperpolarizing or funny current fikdn,fiklr Write total IK (DN,LR2) fik1dn,fik1lr Write IK1 (DN,LR2) finadn,finalr Write fast sodium current (DN,LR2) finacad,finacal Write sodium-calcium exchange current (DN,LR2) finaklr Write sodium-potassium pump current (LR2) fipore Write electroporation current (LR2) fito Write transient outward current (DN): Write the F1 gate (DN) to f1gate.lst file.
ff2gate Write the F2 gate (DN) to f2gate.lst file. ffcagate Write the FCA gate (LR2) to fcagte.lst file. fggate Write the G gate (LR2) to ggate.lst file. fhgate Write the H gate (DN,LR2) to hgate.lst file. fjgate Write the J gate (LR2) to jgate.lst file. fmgate Write the M gate (DN,LR2) to mgate.lst file. frggate Write the RG gate (DN) to rggate.lst file. fxgate Write the X gate (DN) to xgate.lst file. fygate Write the Y gate (DN) to ygate.lst file. fiion Write the total ionic current to the file iion.lst file. fim Write the total membrane current to the file im.lst file. fcaidn,fcailr Write intracelullar calcium concentration (DN,LR2) fcajsr Write JSR calcium concentration (LR2) fcansr Write NSR calcium concentration (LR2) ficatch Write T-channel calcium current (LR2) ficadn,ficalr Write total calcium current (DN,LR2) fif Write hyperpolarizing or funny current fikdn,fiklr Write total IK (DN,LR2) fik1dn,fik1lr Write IK1 (DN,LR2) finadn,finalr Write fast sodium current (DN,LR2) finacad,finacal Write sodium-calcium exchange current (DN,LR2) finaklr Write sodium-potassium pump current (LR2) fipore Write electroporation current (LR2) fito Write transient outward current (DN): Write the F2 gate (DN) to f2gate.lst file.
ffcagate Write the FCA gate (LR2) to fcagte.lst file. fggate Write the G gate (LR2) to ggate.lst file. fhgate Write the H gate (DN,LR2) to hgate.lst file. fjgate Write the J gate (LR2) to jgate.lst file. fmgate Write the M gate (DN,LR2) to mgate.lst file. frggate Write the RG gate (DN) to rggate.lst file. fxgate Write the X gate (DN) to xgate.lst file. fygate Write the Y gate (DN) to ygate.lst file. fiion Write the total ionic current to the file iion.lst file. fim Write the total membrane current to the file im.lst file. fcaidn,fcailr Write intracelullar calcium concentration (DN,LR2) fcajsr Write JSR calcium concentration (LR2) fcansr Write NSR calcium concentration (LR2) ficatch Write T-channel calcium current (LR2) ficadn,ficalr Write total calcium current (DN,LR2) fif Write hyperpolarizing or funny current fikdn,fiklr Write total IK (DN,LR2) fik1dn,fik1lr Write IK1 (DN,LR2) finadn,finalr Write fast sodium current (DN,LR2) finacad,finacal Write sodium-calcium exchange current (DN,LR2) finaklr Write sodium-potassium pump current (LR2) fipore Write electroporation current (LR2) fito Write transient outward current (DN): Write the FCA gate (LR2) to fcagte.lst file.
fggate Write the G gate (LR2) to ggate.lst file. fhgate Write the H gate (DN,LR2) to hgate.lst file. fjgate Write the J gate (LR2) to jgate.lst file. fmgate Write the M gate (DN,LR2) to mgate.lst file. frggate Write the RG gate (DN) to rggate.lst file. fxgate Write the X gate (DN) to xgate.lst file. fygate Write the Y gate (DN) to ygate.lst file. fiion Write the total ionic current to the file iion.lst file. fim Write the total membrane current to the file im.lst file. fcaidn,fcailr Write intracelullar calcium concentration (DN,LR2) fcajsr Write JSR calcium concentration (LR2) fcansr Write NSR calcium concentration (LR2) ficatch Write T-channel calcium current (LR2) ficadn,ficalr Write total calcium current (DN,LR2) fif Write hyperpolarizing or funny current fikdn,fiklr Write total IK (DN,LR2) fik1dn,fik1lr Write IK1 (DN,LR2) finadn,finalr Write fast sodium current (DN,LR2) finacad,finacal Write sodium-calcium exchange current (DN,LR2) finaklr Write sodium-potassium pump current (LR2) fipore Write electroporation current (LR2) fito Write transient outward current (DN): Write the G gate (LR2) to ggate.lst file.
fhgate Write the H gate (DN,LR2) to hgate.lst file. fjgate Write the J gate (LR2) to jgate.lst file. fmgate Write the M gate (DN,LR2) to mgate.lst file. frggate Write the RG gate (DN) to rggate.lst file. fxgate Write the X gate (DN) to xgate.lst file. fygate Write the Y gate (DN) to ygate.lst file. fiion Write the total ionic current to the file iion.lst file. fim Write the total membrane current to the file im.lst file. fcaidn,fcailr Write intracelullar calcium concentration (DN,LR2) fcajsr Write JSR calcium concentration (LR2) fcansr Write NSR calcium concentration (LR2) ficatch Write T-channel calcium current (LR2) ficadn,ficalr Write total calcium current (DN,LR2) fif Write hyperpolarizing or funny current fikdn,fiklr Write total IK (DN,LR2) fik1dn,fik1lr Write IK1 (DN,LR2) finadn,finalr Write fast sodium current (DN,LR2) finacad,finacal Write sodium-calcium exchange current (DN,LR2) finaklr Write sodium-potassium pump current (LR2) fipore Write electroporation current (LR2) fito Write transient outward current (DN): Write the H gate (DN,LR2) to hgate.lst file.
fjgate Write the J gate (LR2) to jgate.lst file. fmgate Write the M gate (DN,LR2) to mgate.lst file. frggate Write the RG gate (DN) to rggate.lst file. fxgate Write the X gate (DN) to xgate.lst file. fygate Write the Y gate (DN) to ygate.lst file. fiion Write the total ionic current to the file iion.lst file. fim Write the total membrane current to the file im.lst file. fcaidn,fcailr Write intracelullar calcium concentration (DN,LR2) fcajsr Write JSR calcium concentration (LR2) fcansr Write NSR calcium concentration (LR2) ficatch Write T-channel calcium current (LR2) ficadn,ficalr Write total calcium current (DN,LR2) fif Write hyperpolarizing or funny current fikdn,fiklr Write total IK (DN,LR2) fik1dn,fik1lr Write IK1 (DN,LR2) finadn,finalr Write fast sodium current (DN,LR2) finacad,finacal Write sodium-calcium exchange current (DN,LR2) finaklr Write sodium-potassium pump current (LR2) fipore Write electroporation current (LR2) fito Write transient outward current (DN): Write the J gate (LR2) to jgate.lst file.
fmgate Write the M gate (DN,LR2) to mgate.lst file. frggate Write the RG gate (DN) to rggate.lst file. fxgate Write the X gate (DN) to xgate.lst file. fygate Write the Y gate (DN) to ygate.lst file. fiion Write the total ionic current to the file iion.lst file. fim Write the total membrane current to the file im.lst file. fcaidn,fcailr Write intracelullar calcium concentration (DN,LR2) fcajsr Write JSR calcium concentration (LR2) fcansr Write NSR calcium concentration (LR2) ficatch Write T-channel calcium current (LR2) ficadn,ficalr Write total calcium current (DN,LR2) fif Write hyperpolarizing or funny current fikdn,fiklr Write total IK (DN,LR2) fik1dn,fik1lr Write IK1 (DN,LR2) finadn,finalr Write fast sodium current (DN,LR2) finacad,finacal Write sodium-calcium exchange current (DN,LR2) finaklr Write sodium-potassium pump current (LR2) fipore Write electroporation current (LR2) fito Write transient outward current (DN): Write the M gate (DN,LR2) to mgate.lst file.
frggate Write the RG gate (DN) to rggate.lst file. fxgate Write the X gate (DN) to xgate.lst file. fygate Write the Y gate (DN) to ygate.lst file. fiion Write the total ionic current to the file iion.lst file. fim Write the total membrane current to the file im.lst file. fcaidn,fcailr Write intracelullar calcium concentration (DN,LR2) fcajsr Write JSR calcium concentration (LR2) fcansr Write NSR calcium concentration (LR2) ficatch Write T-channel calcium current (LR2) ficadn,ficalr Write total calcium current (DN,LR2) fif Write hyperpolarizing or funny current fikdn,fiklr Write total IK (DN,LR2) fik1dn,fik1lr Write IK1 (DN,LR2) finadn,finalr Write fast sodium current (DN,LR2) finacad,finacal Write sodium-calcium exchange current (DN,LR2) finaklr Write sodium-potassium pump current (LR2) fipore Write electroporation current (LR2) fito Write transient outward current (DN): Write the RG gate (DN) to rggate.lst file.
fxgate Write the X gate (DN) to xgate.lst file. fygate Write the Y gate (DN) to ygate.lst file. fiion Write the total ionic current to the file iion.lst file. fim Write the total membrane current to the file im.lst file. fcaidn,fcailr Write intracelullar calcium concentration (DN,LR2) fcajsr Write JSR calcium concentration (LR2) fcansr Write NSR calcium concentration (LR2) ficatch Write T-channel calcium current (LR2) ficadn,ficalr Write total calcium current (DN,LR2) fif Write hyperpolarizing or funny current fikdn,fiklr Write total IK (DN,LR2) fik1dn,fik1lr Write IK1 (DN,LR2) finadn,finalr Write fast sodium current (DN,LR2) finacad,finacal Write sodium-calcium exchange current (DN,LR2) finaklr Write sodium-potassium pump current (LR2) fipore Write electroporation current (LR2) fito Write transient outward current (DN): Write the X gate (DN) to xgate.lst file.
fygate Write the Y gate (DN) to ygate.lst file. fiion Write the total ionic current to the file iion.lst file. fim Write the total membrane current to the file im.lst file. fcaidn,fcailr Write intracelullar calcium concentration (DN,LR2) fcajsr Write JSR calcium concentration (LR2) fcansr Write NSR calcium concentration (LR2) ficatch Write T-channel calcium current (LR2) ficadn,ficalr Write total calcium current (DN,LR2) fif Write hyperpolarizing or funny current fikdn,fiklr Write total IK (DN,LR2) fik1dn,fik1lr Write IK1 (DN,LR2) finadn,finalr Write fast sodium current (DN,LR2) finacad,finacal Write sodium-calcium exchange current (DN,LR2) finaklr Write sodium-potassium pump current (LR2) fipore Write electroporation current (LR2) fito Write transient outward current (DN): Write the Y gate (DN) to ygate.lst file.
fiion Write the total ionic current to the file iion.lst file. fim Write the total membrane current to the file im.lst file. fcaidn,fcailr Write intracelullar calcium concentration (DN,LR2) fcajsr Write JSR calcium concentration (LR2) fcansr Write NSR calcium concentration (LR2) ficatch Write T-channel calcium current (LR2) ficadn,ficalr Write total calcium current (DN,LR2) fif Write hyperpolarizing or funny current fikdn,fiklr Write total IK (DN,LR2) fik1dn,fik1lr Write IK1 (DN,LR2) finadn,finalr Write fast sodium current (DN,LR2) finacad,finacal Write sodium-calcium exchange current (DN,LR2) finaklr Write sodium-potassium pump current (LR2) fipore Write electroporation current (LR2) fito Write transient outward current (DN): Write the total ionic current to the file iion.lst file.
fim Write the total membrane current to the file im.lst file. fcaidn,fcailr Write intracelullar calcium concentration (DN,LR2) fcajsr Write JSR calcium concentration (LR2) fcansr Write NSR calcium concentration (LR2) ficatch Write T-channel calcium current (LR2) ficadn,ficalr Write total calcium current (DN,LR2) fif Write hyperpolarizing or funny current fikdn,fiklr Write total IK (DN,LR2) fik1dn,fik1lr Write IK1 (DN,LR2) finadn,finalr Write fast sodium current (DN,LR2) finacad,finacal Write sodium-calcium exchange current (DN,LR2) finaklr Write sodium-potassium pump current (LR2) fipore Write electroporation current (LR2) fito Write transient outward current (DN): Write the total membrane current to the file im.lst file.
fcaidn,fcailr Write intracelullar calcium concentration (DN,LR2) fcajsr Write JSR calcium concentration (LR2) fcansr Write NSR calcium concentration (LR2) ficatch Write T-channel calcium current (LR2) ficadn,ficalr Write total calcium current (DN,LR2) fif Write hyperpolarizing or funny current fikdn,fiklr Write total IK (DN,LR2) fik1dn,fik1lr Write IK1 (DN,LR2) finadn,finalr Write fast sodium current (DN,LR2) finacad,finacal Write sodium-calcium exchange current (DN,LR2) finaklr Write sodium-potassium pump current (LR2) fipore Write electroporation current (LR2) fito Write transient outward current (DN): Write intracelullar calcium concentration (DN,LR2)
fcajsr Write JSR calcium concentration (LR2) fcansr Write NSR calcium concentration (LR2) ficatch Write T-channel calcium current (LR2) ficadn,ficalr Write total calcium current (DN,LR2) fif Write hyperpolarizing or funny current fikdn,fiklr Write total IK (DN,LR2) fik1dn,fik1lr Write IK1 (DN,LR2) finadn,finalr Write fast sodium current (DN,LR2) finacad,finacal Write sodium-calcium exchange current (DN,LR2) finaklr Write sodium-potassium pump current (LR2) fipore Write electroporation current (LR2) fito Write transient outward current (DN): Write JSR calcium concentration (LR2)
fcansr Write NSR calcium concentration (LR2) ficatch Write T-channel calcium current (LR2) ficadn,ficalr Write total calcium current (DN,LR2) fif Write hyperpolarizing or funny current fikdn,fiklr Write total IK (DN,LR2) fik1dn,fik1lr Write IK1 (DN,LR2) finadn,finalr Write fast sodium current (DN,LR2) finacad,finacal Write sodium-calcium exchange current (DN,LR2) finaklr Write sodium-potassium pump current (LR2) fipore Write electroporation current (LR2) fito Write transient outward current (DN): Write NSR calcium concentration (LR2)
ficatch Write T-channel calcium current (LR2) ficadn,ficalr Write total calcium current (DN,LR2) fif Write hyperpolarizing or funny current fikdn,fiklr Write total IK (DN,LR2) fik1dn,fik1lr Write IK1 (DN,LR2) finadn,finalr Write fast sodium current (DN,LR2) finacad,finacal Write sodium-calcium exchange current (DN,LR2) finaklr Write sodium-potassium pump current (LR2) fipore Write electroporation current (LR2) fito Write transient outward current (DN): Write T-channel calcium current (LR2)
ficadn,ficalr Write total calcium current (DN,LR2) fif Write hyperpolarizing or funny current fikdn,fiklr Write total IK (DN,LR2) fik1dn,fik1lr Write IK1 (DN,LR2) finadn,finalr Write fast sodium current (DN,LR2) finacad,finacal Write sodium-calcium exchange current (DN,LR2) finaklr Write sodium-potassium pump current (LR2) fipore Write electroporation current (LR2) fito Write transient outward current (DN): Write total calcium current (DN,LR2)
fif Write hyperpolarizing or funny current fikdn,fiklr Write total IK (DN,LR2) fik1dn,fik1lr Write IK1 (DN,LR2) finadn,finalr Write fast sodium current (DN,LR2) finacad,finacal Write sodium-calcium exchange current (DN,LR2) finaklr Write sodium-potassium pump current (LR2) fipore Write electroporation current (LR2) fito Write transient outward current (DN): Write hyperpolarizing or funny current
fikdn,fiklr Write total IK (DN,LR2) fik1dn,fik1lr Write IK1 (DN,LR2) finadn,finalr Write fast sodium current (DN,LR2) finacad,finacal Write sodium-calcium exchange current (DN,LR2) finaklr Write sodium-potassium pump current (LR2) fipore Write electroporation current (LR2) fito Write transient outward current (DN): Write total IK (DN,LR2)
fik1dn,fik1lr Write IK1 (DN,LR2) finadn,finalr Write fast sodium current (DN,LR2) finacad,finacal Write sodium-calcium exchange current (DN,LR2) finaklr Write sodium-potassium pump current (LR2) fipore Write electroporation current (LR2) fito Write transient outward current (DN): Write IK1 (DN,LR2)
finadn,finalr Write fast sodium current (DN,LR2) finacad,finacal Write sodium-calcium exchange current (DN,LR2) finaklr Write sodium-potassium pump current (LR2) fipore Write electroporation current (LR2) fito Write transient outward current (DN): Write fast sodium current (DN,LR2)
finacad,finacal Write sodium-calcium exchange current (DN,LR2) finaklr Write sodium-potassium pump current (LR2) fipore Write electroporation current (LR2) fito Write transient outward current (DN): Write sodium-calcium exchange current (DN,LR2)
finaklr Write sodium-potassium pump current (LR2) fipore Write electroporation current (LR2) fito Write transient outward current (DN): Write sodium-potassium pump current (LR2)
fipore Write electroporation current (LR2) fito Write transient outward current (DN): Write electroporation current (LR2)
fito Write transient outward current (DN): Write transient outward current (DN)

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Machine-specific architectures supported Temporal Integration Methods from Vm Time-stepping Methods Membrane Models Domains Control and Post-processing Output of Time-space Information